SGN Marker C2_At1g09150

SGN-M6555
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303989 (SGN)
123963 (CGN)
---
Capsicum annuumSingleSGN-U201632---
Lycopersicon CombinedSingleSGN-U222158---
Solanum tuberosumSingleSGN-U249105---
ArabidopsisSingleAt1g09150 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 24953)
Chromosome
1
Position
2.95 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41012
Forward primer (5'-3')
ACAGGGGCGCAATTAAATTTGTC
Accessions and product sizes
Solanum lycopersicum TA209
400
Solanum pennellii TA56
400
Approximate temperature
55°C
Reverse primer (5'-3')
TCCAGAGCCCATCATTAAGATAATGC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
400
Solanum lycopersicum TA209
360
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 9962
Forward primer (5'-3')
ACAGGGGCGCAATTAAATTTGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGAGCCCATCATTAAGATAATGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1500
Approximate temperature
55°C
  
PCR data   Exp. ID 9963
Forward primer (5'-3')
ACAGGGGCGCAATTAAATTTGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGAGCCCATCATTAAGATAATGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1500
Approximate temperature
55°C
  
PCR data   Exp. ID 9964
Forward primer (5'-3')
ACAGGGGCGCAATTAAATTTGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGAGCCCATCATTAAGATAATGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1500
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At1g09150F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g09150  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6555 marker 6555
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