SGN Marker C2_At1g09740

SGN-M6563
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U199895---
Lycopersicon CombinedSingleSGN-U236848---
ArabidopsisSingleAt1g09740 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 24961)
Chromosome
1
Position
3.16 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41016
Forward primer (5'-3')
ATGGGTTCCCGTGCTTTTGG
Accessions and product sizes
Solanum pennellii TA56
2000
Approximate temperature
Unknown
Reverse primer (5'-3')
TTGCTTACACTCCCCAGAAACATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 9972
Forward primer (5'-3')
ATGGGTTCCCGTGCTTTTGG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTGCTTACACTCCCCAGAAACATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2000
Approximate temperature
Unknown
  
PCR data   Exp. ID 9973
Forward primer (5'-3')
ATGGGTTCCCGTGCTTTTGG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTGCTTACACTCCCCAGAAACATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2000
Approximate temperature
Unknown
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At1g09740  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6563 marker 6563
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