SGN Marker CT156

SGN-M657

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
500
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT156 RFLP image
Forward sequence
not available
Reverse sequence
TCTTCAAGGGATAAGGCTGCCAGCTCGAATGAGTACAAGTCTCAAAAAGAATAATGATGAAGTTGCTTGATTCTCGAGCAGGGAGGAGTG
AGATGCCAAGGCTAAATCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAAGTTGAACGAACAGAGAGAAAGGCGAAGTGAGAGTTT
GGCTAACAAGAGGTCTAGACTTTCTGCTGCCTCCAACCCATCTATTGCTGCTTAAGATCATTTCGAAAGA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1436032.1e-20141 (56.4% of RFLP seq)-
SGN-U1436042.1e-23142 (56.8% of RFLP seq)-
SGN-U1505564.5e-4696 (38.4% of RFLP seq)-
SGN-U1436056.3e-73157 (62.8% of RFLP seq)-
SGN-U1436026.3e-73157 (62.8% of RFLP seq)-
Mapped locations  
Map: Tomato-EXPIMP 2009   
Map version
126 (location: 53448)
Chromosome
12
Position
72.12 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2009

Map: Sun1642 x LA1589   
Map version
85 (location: 43636)
Chromosome
12
Position
78.60 cM
Confidence
uncalculated
Protocol
RFLP


Sun1642 x LA1589

Map: Yellow Stuffer x LA1589   
Map version
83 (location: 43498)
Chromosome
12
Position
82.10 cM
Confidence
uncalculated
Protocol
RFLP


Yellow Stuffer x LA1589

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43036)
Chromosome
12
Position
78.20 cM
Confidence
uncalculated
Protocol
RFLP


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

Map: Eggplant-COSII   
Map version
63 (location: 42303)
Chromosome
5
Position
106.10 cM
Confidence
I(LOD2)
Protocol
RFLP


Eggplant-COSII

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40740)
Chromosome
12
Position
77.00 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38981)
Chromosome
12
Position
97.00 cM
Confidence
CF(LOD3)
Protocol
RFLP
Subscript
A


Tomato-EXPEN 2000

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38982)
Chromosome
8
Position
0.00 cM
Confidence
F(LOD3)
Protocol
RFLP
Subscript
B


Tomato-EXPEN 2000

Map: Tomato-EXHIR 1997   
Map version
32 (location: 9737)
Chromosome
12
Position
111.90 cM
Confidence
I(LOD2)
Protocol
RFLP
Subscript
B


Tomato-EXHIR 1997

Map: Eggplant-LXM 2002   
Map version
29 (location: 9739)
Chromosome
5
Position
108.00 cM
Confidence
I(LOD2)
Protocol
RFLP


Eggplant-LXM 2002

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9738)
Chromosome
12
Position
72.70 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Tomato-EXPIMP 2001   
Map version
26 (location: 9746)
Chromosome
12
Position
92.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPIMP 2001
Overgo hybridization and physical mapping 
CT156 was used as an overgo probe on plate 4 [well B3]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

 Overgo Sequences

A sequence
GAGATGCCAAGGCTAAATCGGAAG
B sequence
TTCTGATAGTCAGCTGCTTCCGAT
AB sequence
GAGATGCCAAGGCTAAATCGGAAGCAGCTG
Marker sequence
TCTTCAAGGGATAAGGCTGCCAGCTCGAATGAGTACAAGTCTCAAAAAGA
ATAATGATGAAGTTGCTTGATTCTCGAGCAGGGAGGAGTGAGATGCCAAG
GCTAAATCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAAGTTGAA
CGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAACAAGAGGTCTAGAC
TTTCTGCTGCCTCCAACCCATCTATTGCTGCTTAAGATCATTTCGAAAGA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of CT156  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D657 marker 657
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