SGN Marker C2_At1g11380

SGN-M6578
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307754 (SGN)
131828 (CGN)		---
Lycopersicon CombinedSingleSGN-U240074---
Solanum tuberosumMultipleSGN-U247347---
ArabidopsisSingleAt1g11380 on TAIR---
Mapped locations  
Map: Eggplant-COSII   
Map version
63 (location: 42165)
Chromosome
2
Position
51.30 cM
Confidence
F(LOD3)
Protocol
dCAPS


Eggplant-COSII

PCR data   Exp. ID 43728
Forward primer (5'-3')
CAACCTGCATTAAAGAACAACAAAGTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGCCATCTTGGACATTGTTCATCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Pepper-COSII   
Map version
58 (location: 41296)
Chromosome
9
Position
45.70 cM
Confidence
I
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43272
Forward primer (5'-3')
TGGTGATAGTTCTTTGGATGATTGC
Accessions and product sizes
Approximate temperature
58°C
Reverse primer (5'-3')
TCTAGATTCCTATACAATAAGACAACAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38088)
Chromosome
2
Position
69.90 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39382
Forward primer (5'-3')
TGGTGATAGTTCTTTGGATGATTGC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TGCCATCTTGGACATTGTTCATCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24977)
Chromosome
1
Position
3.83 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g11380  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6578 marker 6578
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