Sol Genomics Network

SGN Marker C2_At1g11430

SGN-M6580
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	310746 (SGN) 131040 (CGN)	-	-	-
Lycopersicon Combined	Multiple	SGN-U215670	-	-	-
Solanum tuberosum	Single	SGN-U245889	-	-	-
Arabidopsis	Single	At1g11430 on TAIR	-	-	-

Mapped locations

Map: Eggplant-RAD 2012
Map version 174 (location: 132172)
Chromosome 2
Position 64.17 cM
Confidence uncalculated
Protocol CAPS

Eggplant-RAD 2012

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46553)
Chromosome 2
Position 6.70 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46427)
Chromosome 2
Position 4.80 cM
Confidence I(LOD2)
Protocol CAPS

Tobacco N. acuminata

Map: Eggplant-COSII
Map version 63 (location: 42166)
Chromosome 2
Position 54.00 cM
Confidence F(LOD3)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43729

Forward primer (5'-3')

AGTTCCCTAAAGACCCTGCTCCTAC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACTAAAGGCATACATGTTCTTCTTTGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41297)
Chromosome 2
Position 81.00 cM
Confidence I(LOD2)
Protocol dCAPS

Pepper-COSII

PCR data Exp. ID 43273

Forward primer (5'-3')

CTGTATGATATGATTCTGGTGATTTTTCC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACTAAAGGCATACATGTTCTTCTTTGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38089)
Chromosome 2
Position 70.10 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39383

Forward primer (5'-3')

AGTTCCCTAAAGACCCTGCTCCTAC

Accessions and product sizes

Solanum lycopersicum TA209

2400

Solanum pennellii TA56

2400

Approximate temperature

55°C

Reverse primer (5'-3')

ACTAAAGGCATACATGTTCTTCTTTGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 24979)
Chromosome 1
Position 3.85 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 9995
Forward primer (5'-3') AGTTCCCTAAAGACCCTGCTCCTAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAAAGGCATACATGTTCTTCTTTGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 650	Approximate temperature 55°C

PCR data Exp. ID 9996
Forward primer (5'-3') AGTTCCCTAAAGACCCTGCTCCTAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAAAGGCATACATGTTCTTCTTTGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 650	Approximate temperature 55°C

PCR data Exp. ID 9997
Forward primer (5'-3') AGTTCCCTAAAGACCCTGCTCCTAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAAAGGCATACATGTTCTTCTTTGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 650	Approximate temperature 55°C

PCR data Exp. ID 9998
Forward primer (5'-3') AGTTCCCTAAAGACCCTGCTCCTAC	Digested band sizes (using RsaI) Solanum pennellii LA716: 410 Solanum lycopersicum LA925: 480	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACTAAAGGCATACATGTTCTTCTTTGC	Enzymes All possible enzymes for pennellii and and lycopersicum: AvaII,BslI,RsaI,Sau96I,SsPI,TspRI
Accessions and product sizes Solanum pennellii LA716: 650 Solanum lycopersicum LA925: 650	Approximate temperature 55°C