SGN Marker C2_At1g12230

SGN-M6590
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Lycopersicon CombinedSingleSGN-U215653---
Solanum tuberosumSingleSGN-U245314---
ArabidopsisSingleAt1g12230 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 24989)
Chromosome
1
Position
4.15 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41025
Forward primer (5'-3')
TGTAGCAAATCATAGTGAGATCGTTCC
Accessions and product sizes
Solanum lycopersicum TA209
1600
Solanum pennellii TA56
1600
Approximate temperature
53°C
Reverse primer (5'-3')
AGCTTACAGTACCAGCAGTTGGAGG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1300
Solanum lycopersicum TA209
1600
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10005
Forward primer (5'-3')
TGTAGCAAATCATAGTGAGATCGTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTTACAGTACCAGCAGTTGGAGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
Approximate temperature
53°C
  
PCR data   Exp. ID 10006
Forward primer (5'-3')
TGTAGCAAATCATAGTGAGATCGTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTTACAGTACCAGCAGTTGGAGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
Approximate temperature
53°C
  
PCR data   Exp. ID 10007
Forward primer (5'-3')
TGTAGCAAATCATAGTGAGATCGTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTTACAGTACCAGCAGTTGGAGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
Approximate temperature
53°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g12230  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6590 marker 6590
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