SGN Marker C2_At1g15270

SGN-M6619
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306829 (SGN)
129777 (CGN)
---
Lycopersicon CombinedMultipleSGN-U212997---
Solanum tuberosumSingleSGN-U244510---
ArabidopsisSingleAt1g15270 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25021)
Chromosome
1
Position
5.25 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41034
Forward primer (5'-3')
AAGAAAAAGCTTATATTGGGTTAGGG
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
AGCCTTTGCCTTGAGCTCCTTCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10042
Forward primer (5'-3')
TGGAAAAGCAAAGCCTTTGAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
CTGAGCCTTTGCCTTGAGCTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1500
Approximate temperature
53°C
  
PCR data   Exp. ID 10043
Forward primer (5'-3')
TGGAAAAGCAAAGCCTTTGAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
CTGAGCCTTTGCCTTGAGCTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 750
Approximate temperature
53°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At1g15270  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6619 marker 6619
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