SGN Marker C2_At1g16870

SGN-M6635
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U201047---
Lycopersicon CombinedSingleSGN-U225426---
Solanum tuberosumSingleSGN-U247120---
ArabidopsisSingleAt1g16870 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46558)
Chromosome
6
Position
79.30 cM
Confidence
CF(LOD3)
Protocol
dCAPS


Tobacco N. tomentosiformis

Map: Tobacco N. acuminata   
Map version
89 (location: 46428)
Chromosome
6
Position
102.80 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. acuminata

Map: Pepper-COSII   
Map version
58 (location: 41305)
Chromosome
6
Position
133.00 cM
Confidence
I
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43281
Forward primer (5'-3')
ACCCTGAAGAAATGCTCCGGTC
Accessions and product sizes
Approximate temperature
58°C
Reverse primer (5'-3')
TCACCGAATTCCTTAAGCATCCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38109)
Chromosome
6
Position
92.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39400
Forward primer (5'-3')
ACCCTGAAGAAATGCTCCGGTC
Accessions and product sizes
Solanum lycopersicum TA209
850
Solanum pennellii TA56
850
Approximate temperature
55°C
Reverse primer (5'-3')
TCACCGAATTCCTTAAGCATCCC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
775
Solanum lycopersicum TA209
425
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25037)
Chromosome
1
Position
5.77 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At1g16870  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6635 marker 6635
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