SGN Marker C2_At1g18440

SGN-M6651
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U204155---
Lycopersicon CombinedSingleSGN-U227830---
Solanum tuberosumSingleSGN-U251316---
ArabidopsisSingleAt1g18440 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25053)
Chromosome
1
Position
6.35 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41045
Forward primer (5'-3')
AGTGTTTCCTTCAAAGCTCAATTTGG
Accessions and product sizes
Solanum lycopersicum TA209
650
Solanum pennellii TA56
650
Approximate temperature
55°C
Reverse primer (5'-3')
TAGCAAGCATAATTGGAACATCTCC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
350
Solanum pennellii TA56
500
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10054
Forward primer (5'-3')
AGTGTTTCCTTCAAAGCTCAATTTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCAAGCATAATTGGAACATCTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 800
Approximate temperature
55°C
  
PCR data   Exp. ID 10055
Forward primer (5'-3')
AGTGTTTCCTTCAAAGCTCAATTTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCAAGCATAATTGGAACATCTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 800
Approximate temperature
55°C
  
PCR data   Exp. ID 10056
Forward primer (5'-3')
AGTGTTTCCTTCAAAGCTCAATTTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TAGCAAGCATAATTGGAACATCTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 800
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g18440  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6651 marker 6651
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