Sol Genomics Network

SGN Marker C2_At1g26520

SGN-M6711
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	310751 (SGN) 127140 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U230107	-	-	-
Solanum tuberosum	Single	SGN-U254853	-	-	-
Arabidopsis	Single	At1g26520 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49206)
Chromosome 5
Position 5.70 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47137)
Chromosome 5
Position 68.00 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46572)
Chromosome 10
Position 60.90 cM
Confidence I(LOD2)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46434)
Chromosome 12
Position 65.80 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. acuminata

Map: Eggplant-COSII
Map version 63 (location: 42176)
Chromosome 10
Position 73.40 cM
Confidence F(LOD3)
Protocol dCAPS

Eggplant-COSII

PCR data Exp. ID 43740

Forward primer (5'-3')

ACTGTGAAGCATAGTTTGGTTCAAGC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TTTGTGTTATAGGCAAGTTGTCAGAT

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41316)
Chromosome 11
Position 25.70 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43292

Forward primer (5'-3')

ACTGTGAAGCATAGTTTGGTTCAAGC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACATCTGATTCCAGCTGATCATCCAAC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38138)
Chromosome 5
Position 56.00 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39426

Forward primer (5'-3')

ACTGTGAAGCATAGTTTGGTTCAAGC

Accessions and product sizes

Solanum pennellii TA56

320

Solanum lycopersicum TA209

320

Approximate temperature

55°C

Reverse primer (5'-3')

ACATCTGATTCCAGCTGATCATCCAAC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

200

Solanum lycopersicum TA209

325

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25116)
Chromosome 1
Position 9.16 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10101
Forward primer (5'-3') ACTGTGAAGCATAGTTTGGTTCAAGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACATCTGATTCCAGCTGATCATCCAAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 700	Approximate temperature 55°C

PCR data Exp. ID 10102
Forward primer (5'-3') ACTGTGAAGCATAGTTTGGTTCAAGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACATCTGATTCCAGCTGATCATCCAAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 700	Approximate temperature 55°C

PCR data Exp. ID 10103
Forward primer (5'-3') ACTGTGAAGCATAGTTTGGTTCAAGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACATCTGATTCCAGCTGATCATCCAAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 700	Approximate temperature 55°C

PCR data Exp. ID 32207
Forward primer (5'-3') ACTGTGAAGCATAGTTTGGTTCAAGC	Digested band sizes (using HincII) Solanum lycopersicum LA925: 700 Solanum pennellii LA716: 310+390	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACATCTGATTCCAGCTGATCATCCAAC	Enzymes All possible enzymes for pennellii and and lycopersicum: HincII All possible enzymes for lycopersicum and pimpinellifolium: AflIII,BspLU11I/PciI
Accessions and product sizes Solanum lycopersicum LA925: 700 Solanum pennellii LA716: 700	Approximate temperature 55°C