Sol Genomics Network

SGN Marker C2_At1g27385

SGN-M6722
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U202126	-	-	-
Lycopersicon Combined	Single	SGN-U228736	-	-	-
Solanum tuberosum	Single	SGN-U250926	-	-	-
Arabidopsis	Single	At1g27385 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49209)
Chromosome 4
Position 33.22 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47140)
Chromosome 4
Position 35.60 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Pepper-COSII
Map version 58 (location: 41317)
Chromosome 5
Position 53.10 cM
Confidence I(LOD2)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43293

Forward primer (5'-3')

ACCGTGCATGATGATTCAACTAATGAG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

AGTACCAATAGCTGTAAAGCCTCTTTC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38145)
Chromosome 4
Position 55.10 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39430

Forward primer (5'-3')

ACCGTGCATGATGATTCAACTAATGAG

Accessions and product sizes

Solanum lycopersicum TA209

1850

Solanum pennellii TA56

1850

Approximate temperature

55°C

Reverse primer (5'-3')

AGTACCAATAGCTGTAAAGCCTCTTTC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

900

Solanum pennellii TA56

750

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25127)
Chromosome 1
Position 9.51 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10114
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 10115
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 10116
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C

PCR data Exp. ID 12546
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 250	Approximate temperature 55°C

PCR data Exp. ID 12547
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 250	Approximate temperature 55°C

PCR data Exp. ID 12548
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 300	Approximate temperature 55°C

PCR data Exp. ID 12549
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 12550
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 300	Approximate temperature 55°C

PCR data Exp. ID 12551
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 300	Approximate temperature 55°C

PCR data Exp. ID 12552
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 300	Approximate temperature 55°C

PCR data Exp. ID 12553
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 320	Approximate temperature 55°C

PCR data Exp. ID 12554
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Physalis TA1367: 250	Approximate temperature 55°C

PCR data Exp. ID 12555
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 320	Approximate temperature 55°C

PCR data Exp. ID 12556
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 300	Approximate temperature 55°C

PCR data Exp. ID 12557
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 320	Approximate temperature 55°C

PCR data Exp. ID 12558
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 350	Approximate temperature 55°C

PCR data Exp. ID 12559
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Coffea canephora BP409: 300	Approximate temperature 55°C

PCR data Exp. ID 32741
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 32742
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 300	Approximate temperature 55°C

PCR data Exp. ID 32743
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 300	Approximate temperature 55°C

PCR data Exp. ID 32744
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 300	Approximate temperature 55°C

PCR data Exp. ID 10117
Forward primer (5'-3') ACCGTGCATGATGATTCAACTAATGAG	Digested band sizes (using DpnII) Solanum pennellii LA716: 250 Solanum lycopersicum LA925: 150+100	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTACCAATAGCTGTAAAGCCTCTTTC	Enzymes All possible enzymes for pennellii and and lycopersicum: DpnII
Accessions and product sizes Solanum lycopersicum LA925: 250 Solanum pennellii LA716: 250	Approximate temperature 55°C