Sol Genomics Network

SGN-M6749
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	302861 (SGN) 124626 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U196768	-	-	-
Lycopersicon Combined	Single	SGN-U220203	-	-	-
Solanum tuberosum	Single	SGN-U266100	-	-	-
Arabidopsis	Single	At1g29990 on TAIR	-	-	-

Tomato-EXPEN 2000

PCR data Exp. ID 39440

Forward primer (5'-3')

TTGGTGAAAACGAGCTTGTTCTC

Accessions and product sizes

Solanum lycopersicum TA209

100

Solanum pennellii TA56

150

Approximate temperature

55°C

Reverse primer (5'-3')

TAAACATTGGCGTCTTCATTCAAC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10147
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 150	Approximate temperature 55°C

PCR data Exp. ID 10148
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 100	Approximate temperature 55°C

PCR data Exp. ID 10149
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 100	Approximate temperature 55°C

PCR data Exp. ID 12560
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 150	Approximate temperature 55°C

PCR data Exp. ID 12561
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 150	Approximate temperature 55°C

PCR data Exp. ID 12562
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 600	Approximate temperature 55°C

PCR data Exp. ID 12563
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 150	Approximate temperature 55°C

PCR data Exp. ID 12564
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 150	Approximate temperature 55°C

PCR data Exp. ID 12565
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 150	Approximate temperature 55°C

PCR data Exp. ID 12566
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 150	Approximate temperature 55°C

PCR data Exp. ID 12567
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Physalis TA1367: 500	Approximate temperature 55°C

PCR data Exp. ID 12568
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 150	Approximate temperature 55°C

PCR data Exp. ID 12569
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 150	Approximate temperature 55°C

PCR data Exp. ID 12570
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Coffea canephora BP409: 150	Approximate temperature 55°C

PCR data Exp. ID 32745
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 150	Approximate temperature 55°C

PCR data Exp. ID 32746
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 150	Approximate temperature 55°C

PCR data Exp. ID 32747
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 150	Approximate temperature 55°C

PCR data Exp. ID 32748
Forward primer (5'-3') TTGGTGAAAACGAGCTTGTTCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAACATTGGCGTCTTCATTCAAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 150	Approximate temperature 55°C