SGN Marker C2_At1g31910

SGN-M6770
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple303127 (SGN)
119812 (CGN)
---
Capsicum annuumSingleSGN-U197621---
Lycopersicon CombinedSingleSGN-U229481---
Solanum tuberosumMultipleSGN-U245471---
ArabidopsisSingleAt1g31910 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25176)
Chromosome
1
Position
11.46 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41079
Forward primer (5'-3')
TGGCCTCTGCTCCTGGAAAGG
Accessions and product sizes
Solanum lycopersicum TA209
2200
Solanum pennellii TA56
2200
Approximate temperature
55°C
Reverse primer (5'-3')
TGGGGAGAAGTCAATTTAACATCTGTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1000
Solanum lycopersicum TA209
600
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10162
Forward primer (5'-3')
TGGCCTCTGCTCCTGGAAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGGAGAAGTCAATTTAACATCTGTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 10163
Forward primer (5'-3')
TGGCCTCTGCTCCTGGAAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGGAGAAGTCAATTTAACATCTGTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 10164
Forward primer (5'-3')
TGGCCTCTGCTCCTGGAAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGGAGAAGTCAATTTAACATCTGTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At1g31910  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6770 marker 6770
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