SGN Marker SSR5

SGN-M678

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 45 High: 45
Repeat motif: CAA   Repeat number: 6
Repeat motif:    Repeat number:
Forward primer: TGGCCGGCTTCTAGAAATAA
Reverse primer: TGAAATCACCCGTGACCTTT
Predicted size: 196
Derivations 
This marker was derived from EST read SGN-E121863
Mapped locations  
Map: Sun1642 x LA1589   
Map version
85 (location: 43810)
Chromosome
2
Position
1.90 cM
Confidence
uncalculated
Protocol
SSR


Sun1642 x LA1589

PCR data   Exp. ID 44823
Forward primer (5'-3')
TGGCCGGCTTCTAGAAATAA
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGAAATCACCCGTGACCTTT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43270)
Chromosome
2
Position
50.20 cM
Confidence
uncalculated
Protocol
SSR


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

PCR data   Exp. ID 44637
Forward primer (5'-3')
TGGCCGGCTTCTAGAAATAA
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGAAATCACCCGTGACCTTT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40759)
Chromosome
2
Position
44.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39255)
Chromosome
2
Position
53.00 cM
Confidence
I
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 31785
Forward primer (5'-3')
TGGCCGGCTTCTAGAAATAA
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TGAAATCACCCGTGACCTTT
Enzymes
  
Accessions and product sizes
Approximate temperature
45°C
  
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of SSR5  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D678 marker 678
User comments 
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