SGN Marker C2_At1g44920

SGN-M6809
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303343 (SGN)
121704 (CGN)
---
Lycopersicon CombinedMultipleSGN-U217860---
Solanum tuberosumSingleSGN-U246668---
ArabidopsisSingleAt1g44920 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25217)
Chromosome
1
Position
16.99 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41091
Forward primer (5'-3')
TGGTTGTTGAGTGCGTATTTCCTTG
Accessions and product sizes
Solanum pennellii TA56
430
Solanum lycopersicum TA209
430
Approximate temperature
55°C
Reverse primer (5'-3')
TCCTCCATCCAATGAGTAGTACAGCAG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
430
Solanum lycopersicum TA209
230
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g44920  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6809 marker 6809
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