SGN Marker C2_At1g49670

SGN-M6835
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310224 (SGN)
130171 (CGN)
---
Capsicum annuumSingleSGN-U200891---
Lycopersicon CombinedSingleSGN-U215908---
Solanum tuberosumMultipleSGN-U245370---
ArabidopsisSingleAt1g49670 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25243)
Chromosome
1
Position
18.39 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41099
Forward primer (5'-3')
ACCCTGGAATATGCGAAAAGCTTC
Accessions and product sizes
Solanum pennellii TA56
2300
Solanum lycopersicum TA209
2300
Approximate temperature
55°C
Reverse primer (5'-3')
TCTTGCCATAGGTGAGCATATTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10238
Forward primer (5'-3')
ACCCTGGAATATGCGAAAAGCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTGCCATAGGTGAGCATATTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2300
Approximate temperature
55°C
  
PCR data   Exp. ID 10239
Forward primer (5'-3')
ACCCTGGAATATGCGAAAAGCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTGCCATAGGTGAGCATATTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2300
Approximate temperature
55°C
  
PCR data   Exp. ID 10240
Forward primer (5'-3')
ACCCTGGAATATGCGAAAAGCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTGCCATAGGTGAGCATATTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2300
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At1g49670  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6835 marker 6835
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