SGN Marker C2_At1g50575

SGN-M6843
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311567 (SGN)
127178 (CGN)		---
Capsicum annuumMultipleSGN-U202882---
Lycopersicon CombinedSingleSGN-U222777---
ArabidopsisSingleAt1g50575 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38191)
Chromosome
7
Position
85.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39470
Forward primer (5'-3')
AGCAATGCTATGAATTAATACACAGGC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGCTTGTAGAGCACCTTGTGTGGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25251)
Chromosome
1
Position
18.73 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10245
Forward primer (5'-3')
AGCAATGCTATGAATTAATACACAGGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGTAGAGCACCTTGTGTGGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10246
Forward primer (5'-3')
AGCAATGCTATGAATTAATACACAGGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGTAGAGCACCTTGTGTGGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10247
Forward primer (5'-3')
AGCAATGCTATGAATTAATACACAGGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGTAGAGCACCTTGTGTGGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 32215
Forward primer (5'-3')
AGCAATGCTATGAATTAATACACAGGC
Digested band sizes (using BstNI)
Solanum pennellii LA716: 500
Solanum lycopersicum LA925: 400
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTGTAGAGCACCTTGTGTGGC
Enzymes
All possible enzymes for pennellii and and lycopersicum: BstNI,ScrFI,Tsp509I
   
Accessions and product sizes
Solanum pennellii LA716: 500
Solanum lycopersicum LA925: 500
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U222777
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At1g50575F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At1g50575F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g50575  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6843 marker 6843
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