SGN Marker C2_At1g51720

SGN-M6849
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304575 (SGN)
123358 (CGN)
---
Lycopersicon CombinedSingleSGN-U229244---
Solanum tuberosumSingleSGN-U255138---
ArabidopsisSingleAt1g51720 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25257)
Chromosome
1
Position
19.19 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41104
Forward primer (5'-3')
TCTTATGTCAAAAACGGCTGGATCG
Accessions and product sizes
Solanum pennellii TA56
1500
Solanum lycopersicum TA209
1500
Approximate temperature
55°C
Reverse primer (5'-3')
TCCAAAGCTAAGAAATTTGGCAATAC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
600+900
Solanum lycopersicum TA209
1200
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10251
Forward primer (5'-3')
TCTTATGTCAAAAACGGCTGGATCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAAAGCTAAGAAATTTGGCAATAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 10252
Forward primer (5'-3')
TCTTATGTCAAAAACGGCTGGATCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAAAGCTAAGAAATTTGGCAATAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 10253
Forward primer (5'-3')
TCTTATGTCAAAAACGGCTGGATCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAAAGCTAAGAAATTTGGCAATAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

At1g51720F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g51720  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6849 marker 6849
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