Sol Genomics Network

SGN Marker C2_At1g53670

SGN-M6862
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U200066	-	-	-
Lycopersicon Combined	Multiple	SGN-U216219	-	-	-
Solanum tuberosum	Single	SGN-U253178	-	-	-
Arabidopsis	Single	At1g53670 on TAIR	-	-	-

Mapped locations

Map: Eggplant-RAD 2012
Map version 174 (location: 132180)
Chromosome 7
Position 62.38 cM
Confidence uncalculated
Protocol CAPS

Eggplant-RAD 2012

Map: Solanum michoacanum 2011
Map version 155 (location: 109224)
Chromosome 7S
Position 46.58 cM
Confidence uncalculated
Protocol CAPS

Solanum michoacanum 2011

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46591)
Chromosome 7
Position 13.40 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Eggplant-COSII
Map version 63 (location: 42186)
Chromosome 7
Position 89.90 cM
Confidence F(LOD3)
Protocol PCR

Eggplant-COSII

PCR data Exp. ID 43750

Forward primer (5'-3')

AAGGGTACAGAACGGGCATTCAC

Accessions and product sizes

Approximate temperature

60°C

Reverse primer (5'-3')

TGTTCCAGGGGTCTTACTGTTCCAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41333)
Chromosome 7
Position 108.90 cM
Confidence I
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43309

Forward primer (5'-3')

AAGGGTACAGAACGGGCATTCAC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TGTTCCAGGGGTCTTACTGTTCCAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38201)
Chromosome 7
Position 54.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39479

Forward primer (5'-3')

AAGGGTACAGAACGGGCATTCAC

Accessions and product sizes

Solanum pennellii TA56

1350

Solanum lycopersicum TA209

1350

Approximate temperature

55°C

Reverse primer (5'-3')

TGTTCCAGGGGTCTTACTGTTCCAG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

600

Solanum pennellii TA56

850

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25271)
Chromosome 1
Position 20.04 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10268
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1100	Approximate temperature 55°C

PCR data Exp. ID 10269
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1200	Approximate temperature 55°C

PCR data Exp. ID 10270
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1200	Approximate temperature 55°C

PCR data Exp. ID 12705
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1000+1200	Approximate temperature 55°C

PCR data Exp. ID 12706
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1100	Approximate temperature 55°C

PCR data Exp. ID 12707
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1000	Approximate temperature 55°C

PCR data Exp. ID 12708
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1000+1100	Approximate temperature 55°C

PCR data Exp. ID 12709
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1200	Approximate temperature 55°C

PCR data Exp. ID 12710
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Physalis TA1367: 1200	Approximate temperature 55°C

PCR data Exp. ID 12711
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 1100	Approximate temperature 55°C

PCR data Exp. ID 12712
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1000	Approximate temperature 55°C

PCR data Exp. ID 12713
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1000	Approximate temperature 55°C

PCR data Exp. ID 32798
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1000	Approximate temperature 55°C

PCR data Exp. ID 32799
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1000+1100	Approximate temperature 55°C

PCR data Exp. ID 32800
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1200	Approximate temperature 55°C

PCR data Exp. ID 10271
Forward primer (5'-3') AAGGGTACAGAACGGGCATTCAC	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 1100 Solanum lycopersicum LA925: 1200	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTTCCAGGGGTCTTACTGTTCCAG	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: AluI
Accessions and product sizes Solanum lycopersicum LA925: 1200 Solanum pennellii LA716: 1100	Approximate temperature 55°C