SGN Marker C2_At1g54140

SGN-M6868
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306485 (SGN)
127620 (CGN)
---
Lycopersicon CombinedSingleSGN-U223209---
Solanum tuberosumMultipleSGN-U248061---
ArabidopsisSingleAt1g54140 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25277)
Chromosome
1
Position
20.22 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41106
Forward primer (5'-3')
AGGACTTGCCAAGGGATGCAAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AGGGTTGATCAGTGTATCTTGTTCAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g54140  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6868 marker 6868
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