SGN Marker C2_At1g55320

SGN-M6880
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310364 (SGN)
125844 (CGN)
---
Solanum tuberosumSingleSGN-U256236---
ArabidopsisSingleAt1g55320 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25290)
Chromosome
1
Position
20.64 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41113
Forward primer (5'-3')
ATATTCAATCTGGTGATGTTTTCTGC
Accessions and product sizes
Solanum lycopersicum TA209
300
Solanum pennellii TA56
300
Approximate temperature
55°C
Reverse primer (5'-3')
TGTCCAATCGAGGCCTTTCATACAC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
150
Solanum pennellii TA56
210
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g55320  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6880 marker 6880
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