Sol Genomics Network

SGN Marker C2_At1g55870

SGN-M6887
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	305006 (SGN) 123586 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U202262	-	-	-
Lycopersicon Combined	Single	SGN-U228097	-	-	-
Solanum tuberosum	Multiple	SGN-U247566	-	-	-
Arabidopsis	Single	At1g55870 on TAIR	-	-	-

Mapped locations

Map: Eggplant-COSII
Map version 63 (location: 42188)
Chromosome 7
Position 108.90 cM
Confidence I(LOD2)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43752

Forward primer (5'-3')

AAGTTCGCCGTCGTTCAGTTCG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ATTGGTTGCTACCAGGAATTTCTTG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38209)
Chromosome 7
Position 90.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39484

Forward primer (5'-3')

AAGTTCGCCGTCGTTCAGTTCG

Accessions and product sizes

Solanum lycopersicum TA209

750

Solanum pennellii TA56

750

Approximate temperature

55°C

Reverse primer (5'-3')

ATTGGTTGCTACCAGGAATTTCTTG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25297)
Chromosome 1
Position 20.90 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10282
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 850	Approximate temperature 55°C

PCR data Exp. ID 10283
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 750	Approximate temperature 55°C

PCR data Exp. ID 10284
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 850	Approximate temperature 55°C

PCR data Exp. ID 12201
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1000	Approximate temperature 55°C

PCR data Exp. ID 12202
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1350	Approximate temperature 55°C

PCR data Exp. ID 12203
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 150	Approximate temperature 55°C

PCR data Exp. ID 12204
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1200+150	Approximate temperature 55°C

PCR data Exp. ID 12205
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 200	Approximate temperature 55°C

PCR data Exp. ID 12206
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 200+350	Approximate temperature 55°C

PCR data Exp. ID 12207
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Physalis TA1367: 1000	Approximate temperature 55°C

PCR data Exp. ID 12208
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12715
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 800	Approximate temperature 55°C

PCR data Exp. ID 12716
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1050	Approximate temperature 55°C

PCR data Exp. ID 12717
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 950	Approximate temperature 55°C

PCR data Exp. ID 12718
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 900	Approximate temperature 55°C

PCR data Exp. ID 12719
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 900	Approximate temperature 55°C

PCR data Exp. ID 12720
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 850	Approximate temperature 55°C

PCR data Exp. ID 12721
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 900	Approximate temperature 55°C

PCR data Exp. ID 12722
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 800	Approximate temperature 55°C

PCR data Exp. ID 12723
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Physalis TA1367: 750	Approximate temperature 55°C

PCR data Exp. ID 12724
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 850	Approximate temperature 55°C

PCR data Exp. ID 12725
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 800	Approximate temperature 55°C

PCR data Exp. ID 12726
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 800	Approximate temperature 55°C

PCR data Exp. ID 12727
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 350	Approximate temperature 55°C

PCR data Exp. ID 32803
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 900	Approximate temperature 55°C

PCR data Exp. ID 32804
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 900	Approximate temperature 55°C

PCR data Exp. ID 32805
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 850	Approximate temperature 55°C

PCR data Exp. ID 32806
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 900	Approximate temperature 55°C

PCR data Exp. ID 33320
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 150	Approximate temperature 55°C

PCR data Exp. ID 33321
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1200+150	Approximate temperature 55°C

PCR data Exp. ID 33322
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 200	Approximate temperature 55°C

PCR data Exp. ID 33323
Forward primer (5'-3') ATTTATTCCACGCTCCGACCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGATGTTGTCTGGCAAAGGAACTCAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 200+350	Approximate temperature 55°C

PCR data Exp. ID 10285
Forward primer (5'-3') AAGTTCGCCGTCGTTCAGTTCG	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 850 Solanum lycopersicum LA925: 750	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTGGTTGCTACCAGGAATTTCTTG	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: amplicon difference
Accessions and product sizes Solanum lycopersicum LA925: 750 Solanum pennellii LA716: 850	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U231559
SGN-U274468

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At1g55870

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6887 marker 6887

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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