Sol Genomics Network

SGN Marker C2_At1g55880

SGN-M6888
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	312097 (SGN) 125435 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U229257	-	-	-
Solanum tuberosum	Single	SGN-U250772	-	-	-
Arabidopsis	Single	At1g55880 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41335)
Chromosome 7
Position 109.40 cM
Confidence I
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43311

Forward primer (5'-3')

AGAAGGCTGAAGAACCCGTTTGATAC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

AGGAACTCCAGACCAGTTGCTGAAGG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38210)
Chromosome 7
Position 89.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39485

Forward primer (5'-3')

AGAAGGCTGAAGAACCCGTTTGATAC

Accessions and product sizes

Solanum pennellii TA56

650

Solanum lycopersicum TA209

650

Approximate temperature

55°C

Reverse primer (5'-3')

AGGAACTCCAGACCAGTTGCTGAAGG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

480

Solanum pennellii TA56

410

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25298)
Chromosome 1
Position 20.90 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10286
Forward primer (5'-3') AGAAGGCTGAAGAACCCGTTTGATAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAACTCCAGACCAGTTGCTGAAGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 580	Approximate temperature 55°C

PCR data Exp. ID 10287
Forward primer (5'-3') AGAAGGCTGAAGAACCCGTTTGATAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAACTCCAGACCAGTTGCTGAAGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 580	Approximate temperature 55°C

PCR data Exp. ID 10288
Forward primer (5'-3') AGAAGGCTGAAGAACCCGTTTGATAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAACTCCAGACCAGTTGCTGAAGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 580	Approximate temperature 55°C

PCR data Exp. ID 10289
Forward primer (5'-3') AGAAGGCTGAAGAACCCGTTTGATAC	Digested band sizes (using Tsp509I) Solanum lycopersicum LA925: 300 Solanum pennellii LA716: 380	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGAACTCCAGACCAGTTGCTGAAGG	Enzymes All possible enzymes for pennellii and and lycopersicum: Hpy188I,Tsp509I
Accessions and product sizes Solanum lycopersicum LA925: 580 Solanum pennellii LA716: 580	Approximate temperature 55°C