SGN Marker C2_At1g61770

SGN-M6924
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300308 (SGN)
123683 (CGN)
---
Lycopersicon CombinedSingleSGN-U216624---
Solanum tuberosumSingleSGN-U247974---
ArabidopsisSingleAt1g61770 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25336)
Chromosome
1
Position
22.82 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41129
Forward primer (5'-3')
TGGTATGGATGCTGGTTCTGGAGGTA
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TCAATAAGATCTTCCTTGGTTGATTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10322
Forward primer (5'-3')
TTCTTCCTTACACTCTGGGAAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTGTACCTCCAGAACCAACATCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 250
Approximate temperature
55°C
  
PCR data   Exp. ID 10323
Forward primer (5'-3')
TTCTTCCTTACACTCTGGGAAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTGTACCTCCAGAACCAACATCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 250
Approximate temperature
55°C
  
PCR data   Exp. ID 10324
Forward primer (5'-3')
TTCTTCCTTACACTCTGGGAAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTGTACCTCCAGAACCAACATCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 250
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g61770  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6924 marker 6924
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