SGN Marker C2_At1g61780

SGN-M6925
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301152 (SGN)
123319 (CGN)
---
Lycopersicon CombinedSingleSGN-U229829---
ArabidopsisSingleAt1g61780 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25337)
Chromosome
1
Position
22.82 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41130
Forward primer (5'-3')
AGGCGGAGGCCGTAAGATTAAC
Accessions and product sizes
Solanum pennellii TA56
200
Solanum lycopersicum TA209
200
Approximate temperature
55°C
Reverse primer (5'-3')
TGTATTTGCACTATTTGTTCCATAAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g61780  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6925 marker 6925
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