Sol Genomics Network

SGN Marker C2_At1g63980

SGN-M6940
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301269 (SGN) 122209 (CGN)	-	-	-
Lycopersicon Combined	Multiple	SGN-U212644	-	-	-
Solanum tuberosum	Single	SGN-U245770	-	-	-
Arabidopsis	Single	At1g63980 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41340)
Chromosome 1
Position 0.00 cM
Confidence F(LOD3)
Protocol dCAPS

Pepper-COSII

PCR data Exp. ID 43316

Forward primer (5'-3')

TGATTTAATCATTGTCATTTTAGTTCTA

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TGAGCATTTACAAGCGTATACGAAA

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38228)
Chromosome 8
Position 77.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39500

Forward primer (5'-3')

AGAAAGTCTGCCGCCTTCCG

Accessions and product sizes

Solanum pennellii TA56

1650

Solanum lycopersicum TA209

1650

Approximate temperature

50°C

Reverse primer (5'-3')

TAGGCCTTCTCCTTCTTCCCATC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

650

Solanum pennellii TA56

670

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25353)
Chromosome 1
Position 23.75 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10339
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1650	Approximate temperature 50°C

PCR data Exp. ID 10340
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1650	Approximate temperature 50°C

PCR data Exp. ID 10341
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1650	Approximate temperature 50°C

PCR data Exp. ID 12769
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1400	Approximate temperature 55°C

PCR data Exp. ID 12770
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1000	Approximate temperature 55°C

PCR data Exp. ID 12771
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1350	Approximate temperature 55°C

PCR data Exp. ID 12772
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1050	Approximate temperature 55°C

PCR data Exp. ID 12773
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 900	Approximate temperature 55°C

PCR data Exp. ID 12774
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 900	Approximate temperature 55°C

PCR data Exp. ID 12775
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 900	Approximate temperature 55°C

PCR data Exp. ID 12776
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Physalis TA1367: 1500	Approximate temperature 55°C

PCR data Exp. ID 12777
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1000	Approximate temperature 55°C

PCR data Exp. ID 32606
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1650	Approximate temperature 55°C

PCR data Exp. ID 32829
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1650	Approximate temperature 55°C

PCR data Exp. ID 32830
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1650	Approximate temperature 55°C

PCR data Exp. ID 32831
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1050	Approximate temperature 55°C

PCR data Exp. ID 32832
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 900	Approximate temperature 55°C

PCR data Exp. ID 32833
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 900	Approximate temperature 55°C

PCR data Exp. ID 10342
Forward primer (5'-3') AGAAAGTCTGCCGCCTTCCG	Digested band sizes (using HinfI) Solanum pennellii LA716: 670 Solanum lycopersicum LA925: 650	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAGGCCTTCTCCTTCTTCCCATC	Enzymes All possible enzymes for pennellii and and lycopersicum: AluI, MspI, DraI, EcoRV, HaeIII, HinfI, DpnII, KpnI
Accessions and product sizes Solanum pennellii LA716: 1650 Solanum lycopersicum LA925: 1650	Approximate temperature 50°C

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At1g63980

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6940 marker 6940

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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