SGN Marker C2_At1g64510

SGN-M6947
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310772 (SGN)
130822 (CGN)
---
Capsicum annuumSingleSGN-U200195---
Lycopersicon CombinedSingleSGN-U217348---
Solanum tuberosumSingleSGN-U246651---
ArabidopsisSingleAt1g64510 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25360)
Chromosome
1
Position
23.96 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41135
Forward primer (5'-3')
AACCGCAGTGTCCACCTGGG
Accessions and product sizes
Solanum lycopersicum TA209
2000
Solanum pennellii TA56
2000
Approximate temperature
55°C
Reverse primer (5'-3')
AGAGCTACAATGGATTCAGGTTTAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10346
Forward primer (5'-3')
AACCGCAGTGTCCACCTGGG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGAGCTACAATGGATTCAGGTTTAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2000
Approximate temperature
55°C
  
PCR data   Exp. ID 10347
Forward primer (5'-3')
AACCGCAGTGTCCACCTGGG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGAGCTACAATGGATTCAGGTTTAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
Approximate temperature
55°C
  
PCR data   Exp. ID 10348
Forward primer (5'-3')
AACCGCAGTGTCCACCTGGG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGAGCTACAATGGATTCAGGTTTAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2000
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Amplicon sequence alignment, FASTA
At1g64510F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g64510  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6947 marker 6947
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)