SGN Marker C2_At1g65445

SGN-M6962
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198659---
Lycopersicon CombinedMultipleSGN-U217406---
Solanum tuberosumSingleSGN-U245296---
ArabidopsisSingleAt1g65445 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25375)
Chromosome
1
Position
24.32 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41141
Forward primer (5'-3')
ACAATGCAAGACCTAAAAGTCACAATCC
Accessions and product sizes
Solanum lycopersicum TA209
900
Solanum pennellii TA56
900
Approximate temperature
55°C
Reverse primer (5'-3')
TCACCAATGGGGACATCCAATTTGAG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
900
Solanum lycopersicum TA209
750
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10355
Forward primer (5'-3')
ACAATGCAAGACCTAAAAGTCACAATCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCACCAATGGGGACATCCAATTTGAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 250
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g65445  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6962 marker 6962
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