SGN Marker C2_At1g65720

SGN-M6965
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300438 (SGN)
119781 (CGN)
---
Capsicum annuumSingleSGN-U196561---
Lycopersicon CombinedSingleSGN-U218032---
Solanum tuberosumSingleSGN-U245533---
ArabidopsisSingleAt1g65720 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41343)
Chromosome
4
Position
51.20 cM
Confidence
F(LOD3)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43319
Forward primer (5'-3')
TCGCTTTCTCTCTCCTCGCCGTCTGCG
Accessions and product sizes
Approximate temperature
58°C
Reverse primer (5'-3')
TCGCAGCAGTTAACGCACCACAACC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38238)
Chromosome
2
Position
45.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39509
Forward primer (5'-3')
TTCTACTTCTCGCTTTCTCTCTCCTC
Accessions and product sizes
Solanum lycopersicum TA209
1500
Solanum pennellii TA56
1500
Approximate temperature
55°C
Reverse primer (5'-3')
TCGCAGCAGTTAACGCACCACAACC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25378)
Chromosome
1
Position
24.44 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10356
Forward primer (5'-3')
TTCTACTTCTCGCTTTCTCTCTCCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGCAGCAGTTAACGCACCACAACC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 500
Approximate temperature
55°C
  
PCR data   Exp. ID 10357
Forward primer (5'-3')
TTCTACTTCTCGCTTTCTCTCTCCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGCAGCAGTTAACGCACCACAACC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 500
Approximate temperature
55°C
  
PCR data   Exp. ID 10358
Forward primer (5'-3')
TTCTACTTCTCGCTTTCTCTCTCCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGCAGCAGTTAACGCACCACAACC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 500
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At1g65720F.cds.txt, plain text
Amplicon sequence alignment, FASTA
At1g65720R.cds.txt, plain text
Reverse amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Reverse amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Reverse amplicon sequence for S. lycopersicum TA209, plain text
Reverse amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Reverse amplicon sequence for S. pennellii TA56, PDF chromatogram
Reverse amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text

Genomic location of C2_At1g65720  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6965 marker 6965
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