SGN Marker C2_At1g69210

SGN-M7002
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304298 (SGN)
121986 (CGN)
---
Capsicum annuumSingleSGN-U204414---
Lycopersicon CombinedSingleSGN-U238412---
ArabidopsisSingleAt1g69210 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41347)
Chromosome
11
Position
21.40 cM
Confidence
I(LOD2)
Protocol
PCR


Pepper-COSII

PCR data   Exp. ID 43323
Forward primer (5'-3')
AGCTCTATTCATTTAAAACTAGTCCTCAT
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TCTTTTCTTGTATTGGCGGCTAAATTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38248)
Chromosome
5
Position
54.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39519
Forward primer (5'-3')
AGCTCTATTCATTTAAAACTAGTCCTCAT
Accessions and product sizes
Solanum pennellii TA56
500
Solanum lycopersicum TA209
500
Approximate temperature
55°C
Reverse primer (5'-3')
TCTTTTCTTGTATTGGCGGCTAAATTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
350
Solanum lycopersicum TA209
500
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25415)
Chromosome
1
Position
26.02 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At1g69210  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7002 marker 7002
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