SGN Marker C2_At1g75200

SGN-M7055
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U200788---
Lycopersicon CombinedSingleSGN-U219151---
Solanum tuberosumSingleSGN-U247473---
ArabidopsisSingleAt1g75200 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25469)
Chromosome
1
Position
28.23 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41166
Forward primer (5'-3')
ACAAGATTAAGTTATTGAAACCAATCAC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TCCTTTGTACCTGCATCTACGCTGAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10426
Forward primer (5'-3')
ACAAGATTAAGTTATTGAAACCAATCAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTGTACCTGCATCTACGCTGAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 10427
Forward primer (5'-3')
ACAAGATTAAGTTATTGAAACCAATCAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTGTACCTGCATCTACGCTGAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 10428
Forward primer (5'-3')
ACAAGATTAAGTTATTGAAACCAATCAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTTGTACCTGCATCTACGCTGAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g75200  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7055 marker 7055
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