SGN Marker C2_At1g79790

SGN-M7115
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304449 (SGN)
119497 (CGN)
---
Lycopersicon CombinedSingleSGN-U226125---
ArabidopsisSingleAt1g79790 on TAIR---
Mapped locations  
Map: Eggplant-COSII   
Map version
63 (location: 42195)
Chromosome
5
Position
53.00 cM
Confidence
F(LOD3)
Protocol
dCAPS


Eggplant-COSII

PCR data   Exp. ID 43759
Forward primer (5'-3')
ACATGAGATGCTTTGTGCATCGGCG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AGAGTTTTAGCTCGTCCTCAATCATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Pepper-COSII   
Map version
58 (location: 41361)
Chromosome
12
Position
57.30 cM
Confidence
I(LOD2)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43337
Forward primer (5'-3')
ATATTCCTACCTTGAAGGTGTTGAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AGAGTTTTAGCTCGTCCTCAATCATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38276)
Chromosome
5
Position
119.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39544
Forward primer (5'-3')
ATATTCCTACCTTGAAGGTGTTGAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AGAGTTTTAGCTCGTCCTCAATCATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25529)
Chromosome
1
Position
30.02 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10475
Forward primer (5'-3')
ATATTCCTACCTTGAAGGTGTTGAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGAGTTTTAGCTCGTCCTCAATCATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 10476
Forward primer (5'-3')
ATATTCCTACCTTGAAGGTGTTGAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGAGTTTTAGCTCGTCCTCAATCATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 10477
Forward primer (5'-3')
ATATTCCTACCTTGAAGGTGTTGAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGAGTTTTAGCTCGTCCTCAATCATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At1g79790F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g79790  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7115 marker 7115
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