SGN Marker C2_At1g79910

SGN-M7120
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U204715---
Lycopersicon CombinedSingleSGN-U227938---
ArabidopsisSingleAt1g79910 on TAIR---
Mapped locations  
Map: Eggplant-COSII   
Map version
63 (location: 42196)
Chromosome
3
Position
142.70 cM
Confidence
F(LOD3)
Protocol
CAPS


Eggplant-COSII

PCR data   Exp. ID 43760
Forward primer (5'-3')
AATGTTGAAGTATTTGAAGAATGATATAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
CATCCGCAAATCTTGCTGCTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38279)
Chromosome
3
Position
148.50 cM
Confidence
F(LOD3)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39545
Forward primer (5'-3')
AATGTTGAAGTATTTGAAGAATGATATAG
Accessions and product sizes
Solanum pennellii TA56
650
Solanum lycopersicum TA209
650
Approximate temperature
55°C
Reverse primer (5'-3')
AGAGAGATTCATCTCAACCAGGAGGC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
650
Solanum lycopersicum TA209
550
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25534)
Chromosome
1
Position
30.06 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At1g79910  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7120 marker 7120
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)