SGN Marker C2_At2g04842

SGN-M7169
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U200525---
Solanum tuberosumSingleSGN-U256383---
ArabidopsisSingleAt2g04842 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41368)
Chromosome
7
Position
57.20 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43344
Forward primer (5'-3')
TGATGCACACATCTTCTGTTTAGAGG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
ATGTCAAAGCGCTGGGGTAAATTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38293)
Chromosome
7
Position
40.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39558
Forward primer (5'-3')
TGATGCACACATCTTCTGTTTAGAGG
Accessions and product sizes
Solanum pennellii TA56
1150
Solanum lycopersicum TA209
1200
Approximate temperature
55°C
Reverse primer (5'-3')
ATGTCAAAGCGCTGGGGTAAATTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25584)
Chromosome
2
Position
1.70 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g04842  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7169 marker 7169
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