SGN Marker C2_At2g05620

SGN-M7175
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U197942---
Lycopersicon CombinedSingleSGN-U216166---
Solanum tuberosumSingleSGN-U250770---
ArabidopsisSingleAt2g05620 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25590)
Chromosome
2
Position
2.08 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41196
Forward primer (5'-3')
TGGCAATTACAAGTTCAATTGCAACAAC
Accessions and product sizes
Solanum lycopersicum TA209
720
Solanum pennellii TA56
720
Approximate temperature
55°C
Reverse primer (5'-3')
AGTTTTTCACCATTCTTCTTTGCCAATC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
500
Solanum pennellii TA56
410
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10523
Forward primer (5'-3')
TGGCAATTACAAGTTCAATTGCAACAAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGTTTTTCACCATTCTTCTTTGCCAATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1500
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g05620  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7175 marker 7175
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