SGN Marker C2_At2g06030

SGN-M7180
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307222 (SGN)
126501 (CGN)		---
Lycopersicon CombinedSingleSGN-U231586---
ArabidopsisSingleAt2g06030 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25595)
Chromosome
2
Position
2.35 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41198
Forward primer (5'-3')
ACTGCAATGTCTCTAGCCAAATGTTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
ATGATCTTAACTTGGGGATTTGAGTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10535
Forward primer (5'-3')
ACTGCAATGTCTCTAGCCAAATGTTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ATGATCTTAACTTGGGGATTTGAGTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2200
 Approximate temperature
55°C
  
PCR data   Exp. ID 10536
Forward primer (5'-3')
ACTGCAATGTCTCTAGCCAAATGTTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ATGATCTTAACTTGGGGATTTGAGTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
 Approximate temperature
55°C
  
PCR data   Exp. ID 10537
Forward primer (5'-3')
ACTGCAATGTCTCTAGCCAAATGTTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
ATGATCTTAACTTGGGGATTTGAGTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1850
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U231586
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g06030  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7180 marker 7180
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