Sol Genomics Network

SGN Marker C2_At2g06530

SGN-M7182
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304024 (SGN) 123326 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U216673	-	-	-
Solanum tuberosum	Single	SGN-U249207	-	-	-
Arabidopsis	Single	At2g06530 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41369)
Chromosome 9
Position 106.90 cM
Confidence F(LOD3)
Protocol dCAPS

Pepper-COSII

PCR data Exp. ID 43345

Forward primer (5'-3')

AAGGTGTCTCCCTCAGAATTCAG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

AGTCTTCAAGACAACCAAATATATTC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38296)
Chromosome 12
Position 32.70 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39561

Forward primer (5'-3')

AAGGTGTCTCCCTCAGAATTCAG

Accessions and product sizes

Solanum lycopersicum TA209

150

Solanum pennellii TA56

150

Approximate temperature

55°C

Reverse primer (5'-3')

ATCTGTCCCATTGCCTTTGTAAC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

100

Solanum pennellii TA56

150

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25597)
Chromosome 2
Position 2.59 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10541
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 750	Approximate temperature 55°C

PCR data Exp. ID 10542
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 750	Approximate temperature 55°C

PCR data Exp. ID 10543
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 750	Approximate temperature 55°C

PCR data Exp. ID 12909
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 800	Approximate temperature 55°C

PCR data Exp. ID 12910
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 800	Approximate temperature 55°C

PCR data Exp. ID 12911
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 900	Approximate temperature 55°C

PCR data Exp. ID 12912
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 900	Approximate temperature 55°C

PCR data Exp. ID 12913
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 950	Approximate temperature 55°C

PCR data Exp. ID 12914
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 900	Approximate temperature 55°C

PCR data Exp. ID 12915
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Physalis TA1367: 900	Approximate temperature 55°C

PCR data Exp. ID 12916
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 900	Approximate temperature 55°C

PCR data Exp. ID 12917
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 900	Approximate temperature 55°C

PCR data Exp. ID 12918
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 900	Approximate temperature 55°C

PCR data Exp. ID 32618
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 800	Approximate temperature 55°C

PCR data Exp. ID 32895
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 800	Approximate temperature 55°C

PCR data Exp. ID 32896
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 800	Approximate temperature 55°C

PCR data Exp. ID 32897
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 900	Approximate temperature 55°C

PCR data Exp. ID 32898
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 900	Approximate temperature 55°C

PCR data Exp. ID 32899
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 950	Approximate temperature 55°C

PCR data Exp. ID 10544
Forward primer (5'-3') AAGGTGTCTCCCTCAGAATTCAG	Digested band sizes (using RsaI) Solanum lycopersicum LA925: 400 Solanum pennellii LA716: 450	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCTGTCCCATTGCCTTTGTAAC	Enzymes All possible enzymes for pennellii and and lycopersicum: RsaI
Accessions and product sizes Solanum pennellii LA716: 750 Solanum lycopersicum LA925: 750	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U216673
SGN-U274387

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At2g06530

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7182 marker 7182

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Accessions	Seedlots
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