SGN Marker C2_At2g16860

SGN-M7211
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301189 (SGN)
124964 (CGN)		---
Lycopersicon CombinedSingleSGN-U224881---
Solanum tuberosumSingleSGN-U249084---
ArabidopsisSingleAt2g16860 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25627)
Chromosome
2
Position
7.31 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41209
Forward primer (5'-3')
AGAGTTCACCCAGATTGTAGGAATGC
Accessions and product sizes
Solanum lycopersicum TA209
700
Solanum pennellii TA56
700
Approximate temperature
55°C
Reverse primer (5'-3')
TGGAGCAGGCTCCTTCTCCCACTTC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
475
Solanum pennellii TA56
600
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10571
Forward primer (5'-3')
AGCCTGCTCCAGCTGGTTGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGTCCGCTTCTTGTATGCATCG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2200
 Approximate temperature
55°C
  
PCR data   Exp. ID 10572
Forward primer (5'-3')
AGCCTGCTCCAGCTGGTTGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGTCCGCTTCTTGTATGCATCG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2200
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g16860  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7211 marker 7211
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