SGN Marker C2_At2g20930

SGN-M7260
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304332 (SGN)
120835 (CGN)
---
Capsicum annuumSingleSGN-U202948---
Lycopersicon CombinedSingleSGN-U221272---
Solanum tuberosumSingleSGN-U249645---
ArabidopsisSingleAt2g20930 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25675)
Chromosome
2
Position
9.01 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41224
Forward primer (5'-3')
AGCCCCACTCTGAACGAGACATTTC
Accessions and product sizes
Solanum lycopersicum TA209
500
Solanum pennellii TA56
500
Approximate temperature
50°C
Reverse primer (5'-3')
TTCACTTTTGTATTAGTCAAATAACC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10618
Forward primer (5'-3')
AGCCCCACTCTGAACGAGACATTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCACTTTTGTATTAGTCAAATAACC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 500
Approximate temperature
50°C
  
PCR data   Exp. ID 10619
Forward primer (5'-3')
AGCCCCACTCTGAACGAGACATTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCACTTTTGTATTAGTCAAATAACC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 500
Approximate temperature
50°C
  
PCR data   Exp. ID 10620
Forward primer (5'-3')
AGCCCCACTCTGAACGAGACATTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCACTTTTGTATTAGTCAAATAACC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 500
Approximate temperature
50°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At2g20930  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7260 marker 7260
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