SGN Marker C2_At2g21960

SGN-M7272
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309899 (SGN)
125899 (CGN)		---
Lycopersicon CombinedMultipleSGN-U234435---
Solanum tuberosumSingleSGN-U247390---
ArabidopsisSingleAt2g21960 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25687)
Chromosome
2
Position
9.36 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41226
Forward primer (5'-3')
TCAATCAGCTGACCTTTTCACTCTTC
Accessions and product sizes
Solanum pennellii TA56
2200
Solanum lycopersicum TA209
2000
Approximate temperature
55°C
Reverse primer (5'-3')
TCTGCTGCTGGTCTTTGCTAAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10628
Forward primer (5'-3')
TCAATCAGCTGACCTTTTCACTCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGCTGCTGGTCTTTGCTAAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 160
 Approximate temperature
55°C
  
PCR data   Exp. ID 10629
Forward primer (5'-3')
TCAATCAGCTGACCTTTTCACTCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGCTGCTGGTCTTTGCTAAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 160
 Approximate temperature
55°C
  
PCR data   Exp. ID 10630
Forward primer (5'-3')
TCAATCAGCTGACCTTTTCACTCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTGCTGCTGGTCTTTGCTAAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 160
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U234435
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g21960  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7272 marker 7272
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