Sol Genomics Network

SGN-M7280
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U204053	-	-	-
Lycopersicon Combined	Single	SGN-U225024	-	-	-
Solanum tuberosum	Single	SGN-U265825	-	-	-
Arabidopsis	Single	At2g23890 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41229

Forward primer (5'-3')

TCTTGCTGATCCCCCCAGATACC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TGGTCAGATTTGTAAAACTCTGGCTTG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10638
Forward primer (5'-3') TCTTGCTGATCCCCCCAGATACC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TGGTCAGATTTGTAAAACTCTGGCTTG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1650	Approximate temperature 53°C

PCR data Exp. ID 10639
Forward primer (5'-3') TCTTGCTGATCCCCCCAGATACC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TGGTCAGATTTGTAAAACTCTGGCTTG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1650	Approximate temperature 53°C

PCR data Exp. ID 10640
Forward primer (5'-3') TCTTGCTGATCCCCCCAGATACC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TGGTCAGATTTGTAAAACTCTGGCTTG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1650	Approximate temperature 53°C