SGN Marker C2_At2g25570

SGN-M7295
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U202447---
Lycopersicon CombinedMultipleSGN-U216563---
Solanum tuberosumSingleSGN-U265415---
ArabidopsisSingleAt2g25570 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25711)
Chromosome
2
Position
10.89 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41234
Forward primer (5'-3')
ACGAGTATGTGCAATCAGATCAGCAAG
Accessions and product sizes
Solanum lycopersicum TA209
1200
Solanum pennellii TA56
1400
Approximate temperature
53°C
Reverse primer (5'-3')
AACACCACAAAGCAGAACCAACATC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1200
Solanum pennellii TA56
1400
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10662
Forward primer (5'-3')
ACGAGTATGTGCAATCAGATCAGCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACACCACAAAGCAGAACCAACATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 240
 Approximate temperature
53°C
  
PCR data   Exp. ID 10663
Forward primer (5'-3')
ACGAGTATGTGCAATCAGATCAGCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACACCACAAAGCAGAACCAACATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 240
 Approximate temperature
53°C
  
PCR data   Exp. ID 10664
Forward primer (5'-3')
ACGAGTATGTGCAATCAGATCAGCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACACCACAAAGCAGAACCAACATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 240
 Approximate temperature
53°C
  
Unigene blast matches for primers 
SGN-U216563
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At2g25570F.cds.txt, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At2g25570F.cds.txt, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g25570  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7295 marker 7295
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)