SGN Marker C2_At2g28380

SGN-M7334
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301147 (SGN)
120889 (CGN)		---
Capsicum annuumSingleSGN-U204551---
Lycopersicon CombinedSingleSGN-U221181---
Solanum tuberosumSingleSGN-U254687---
ArabidopsisSingleAt2g28380 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25751)
Chromosome
2
Position
12.14 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41247
Forward primer (5'-3')
TCTTACAGGAAGTTTCACAAAGAGTAGG
Accessions and product sizes
Solanum lycopersicum TA209
525
Solanum pennellii TA56
525
Approximate temperature
55°C
Reverse primer (5'-3')
ACTGCGAGGAGCAGTTCTTGGAC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
525
Solanum pennellii TA56
350
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g28380  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7334 marker 7334
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