SGN Marker C2_At2g31970

SGN-M7369
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311016 (SGN)
128280 (CGN)
---
Capsicum annuumSingleSGN-U204398---
Lycopersicon CombinedSingleSGN-U219262---
Solanum tuberosumSingleSGN-U254748---
ArabidopsisSingleAt2g31970 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38350)
Chromosome
5
Position
102.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39603
Forward primer (5'-3')
TGCGAGGGAGGTGTAGTGCTGG
Accessions and product sizes
Solanum pennellii TA56
400
Solanum lycopersicum TA209
400
Approximate temperature
55°C
Reverse primer (5'-3')
AACAGAGCTGCAGCAAGACTCTCAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25786)
Chromosome
2
Position
13.61 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10741
Forward primer (5'-3')
TGCGAGGGAGGTGTAGTGCTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACAGAGCTGCAGCAAGACTCTCAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 10742
Forward primer (5'-3')
TGCGAGGGAGGTGTAGTGCTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACAGAGCTGCAGCAAGACTCTCAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 10743
Forward primer (5'-3')
TGCGAGGGAGGTGTAGTGCTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACAGAGCTGCAGCAAGACTCTCAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At2g31970  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7369 marker 7369
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