Sol Genomics Network

SGN-M7370
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	307973 (SGN) 127624 (CGN)	-	-	-
Lycopersicon Combined	Multiple	SGN-U218426	-	-	-
Solanum tuberosum	Single	SGN-U249205	-	-	-
Arabidopsis	Single	At2g32090 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41261

Forward primer (5'-3')

TCCAATTTCGATTCCTTTGTTCAG

Accessions and product sizes

Solanum pennellii TA56

320

Solanum lycopersicum TA209

320

Approximate temperature

55°C

Reverse primer (5'-3')

TCAAAGAAAAAGGCTTGTTTGGTC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10744
Forward primer (5'-3') TCCAATTTCGATTCCTTTGTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAAAGAAAAAGGCTTGTTTGGTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 920	Approximate temperature 55°C

PCR data Exp. ID 10745
Forward primer (5'-3') TCCAATTTCGATTCCTTTGTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAAAGAAAAAGGCTTGTTTGGTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 920	Approximate temperature 55°C

PCR data Exp. ID 10746
Forward primer (5'-3') TCCAATTTCGATTCCTTTGTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCAAAGAAAAAGGCTTGTTTGGTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 920	Approximate temperature 55°C