Sol Genomics Network

SGN Marker C2_At2g33990

SGN-M7395
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U204577	-	-	-
Solanum tuberosum	Single	SGN-U266086	-	-	-
Arabidopsis	Single	At2g33990 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38356)
Chromosome 10
Position 25.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39609

Forward primer (5'-3')

ATAACGCAGCCATAAGGATTCAGAC

Accessions and product sizes

Solanum pennellii TA56

1350

Solanum lycopersicum TA209

1350

Approximate temperature

55°C

Reverse primer (5'-3')

TAAGTTATGAAGCTTTGCCTCTAGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25812)
Chromosome 2
Position 14.37 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 32259
Forward primer (5'-3') ATAACGCAGCCATAAGGATTCAGAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TAAGTTATGAAGCTTTGCCTCTAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 400	Approximate temperature 53°C

PCR data Exp. ID 32260
Forward primer (5'-3') ATAACGCAGCCATAAGGATTCAGAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TAAGTTATGAAGCTTTGCCTCTAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 380	Approximate temperature 53°C

PCR data Exp. ID 32261
Forward primer (5'-3') ATAACGCAGCCATAAGGATTCAGAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TAAGTTATGAAGCTTTGCCTCTAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 380	Approximate temperature 53°C

PCR data Exp. ID 32262
Forward primer (5'-3') ATAACGCAGCCATAAGGATTCAGAC	Digested band sizes (using amplicon difference) Solanum lycopersicum LA925: 380 Solanum pennellii LA716: 400	Mg⁺² concentration 3mM
Reverse primer (5'-3') TAAGTTATGAAGCTTTGCCTCTAGC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: MseI/Tru1I/Tru9I
Accessions and product sizes Solanum pennellii LA716: 400 Solanum lycopersicum LA925: 380	Approximate temperature 53°C

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At2g33990

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7395 marker 7395

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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