SGN Marker C2_At2g35880

SGN-M7411
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303661 (SGN)
119477 (CGN)		---
Solanum tuberosumSingleSGN-U249135---
ArabidopsisSingleAt2g35880 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25830)
Chromosome
2
Position
15.07 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41273
Forward primer (5'-3')
AAAGCAATTGAGGAAGAGCTTGAC
Accessions and product sizes
Solanum lycopersicum TA209
1300
Solanum pennellii TA56
1300
Approximate temperature
55°C
Reverse primer (5'-3')
TGTTTCTTCCGAGCTTAGGAGATAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10793
Forward primer (5'-3')
AAAGCAATTGAGGAAGAGCTTGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTTCTTCCGAGCTTAGGAGATAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 550+850
 Approximate temperature
55°C
  
PCR data   Exp. ID 10794
Forward primer (5'-3')
AAAGCAATTGAGGAAGAGCTTGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTTCTTCCGAGCTTAGGAGATAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 550+850
 Approximate temperature
55°C
  
PCR data   Exp. ID 10795
Forward primer (5'-3')
AAAGCAATTGAGGAAGAGCTTGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTTCTTCCGAGCTTAGGAGATAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 850
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U242043
SGN-U274432
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g35880  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7411 marker 7411
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