SGN Marker C2_At2g36930

SGN-M7423
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302716 (SGN)
120204 (CGN)
---
Capsicum annuumSingleSGN-U198927---
Lycopersicon CombinedSingleSGN-U216530---
Solanum tuberosumSingleSGN-U247062---
ArabidopsisSingleAt2g36930 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38364)
Chromosome
9
Position
15.10 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39617
Forward primer (5'-3')
TCACAGGAGCGTGAAGAAGCG
Accessions and product sizes
Solanum pennellii TA56
350
Solanum lycopersicum TA209
350
Approximate temperature
55°C
Reverse primer (5'-3')
TCTTCGTCTTGAAATGCTCATCCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25843)
Chromosome
2
Position
15.52 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10800
Forward primer (5'-3')
TCACAGGAGCGTGAAGAAGCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCGTCTTGAAATGCTCATCCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 10801
Forward primer (5'-3')
TCACAGGAGCGTGAAGAAGCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCGTCTTGAAATGCTCATCCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 10802
Forward primer (5'-3')
TCACAGGAGCGTGAAGAAGCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCGTCTTGAAATGCTCATCCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 32275
Forward primer (5'-3')
TCACAGGAGCGTGAAGAAGCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTTCGTCTTGAAATGCTCATCCC
Enzymes
All possible enzymes for pennellii and and lycopersicum: ApoI
All possible enzymes for lycopersicum and pimpinellifolium: SsPI,TaqI
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Amplicon sequence alignment, FASTA
At2g36930F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At2g36930  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7423 marker 7423
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