Sol Genomics Network

SGN Marker C2_At2g37025

SGN-M7424
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304705 (SGN) 124317 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U220357	-	-	-
Arabidopsis	Single	At2g37025 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46639)
Chromosome 7
Position 76.90 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46470)
Chromosome 7
Position 76.00 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. acuminata

Map: Tomato-EXPEN 2000
Map version 52 (location: 38365)
Chromosome 9
Position 15.30 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39618

Forward primer (5'-3')

AACATCACAGGCTCTGGACTGTTTC

Accessions and product sizes

Solanum pennellii TA56

850

Solanum lycopersicum TA209

850

Approximate temperature

55°C

Reverse primer (5'-3')

ATGCATGTTCGCCAGTTCACTGAC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

320+400

Solanum pennellii TA56

360+400

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25844)
Chromosome 2
Position 15.56 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 32276
Forward primer (5'-3') AACATCACAGGCTCTGGACTGTTTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') ATGCATGTTCGCCAGTTCACTGAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1300	Approximate temperature 53°C

PCR data Exp. ID 32277
Forward primer (5'-3') AACATCACAGGCTCTGGACTGTTTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') ATGCATGTTCGCCAGTTCACTGAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1200	Approximate temperature 53°C

PCR data Exp. ID 32278
Forward primer (5'-3') AACATCACAGGCTCTGGACTGTTTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') ATGCATGTTCGCCAGTTCACTGAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1200	Approximate temperature 53°C

PCR data Exp. ID 32279
Forward primer (5'-3') AACATCACAGGCTCTGGACTGTTTC	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 1300 Solanum lycopersicum LA925: 1200	Mg⁺² concentration 3mM
Reverse primer (5'-3') ATGCATGTTCGCCAGTTCACTGAC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference
Accessions and product sizes Solanum lycopersicum LA925: 1200 Solanum pennellii LA716: 1300	Approximate temperature 53°C

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At2g37025

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7424 marker 7424

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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