Sol Genomics Network

SGN Marker C2_At2g37240

SGN-M7428
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304697 (SGN) 124468 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U202349	-	-	-
Lycopersicon Combined	Multiple	SGN-U218930	-	-	-
Solanum tuberosum	Single	SGN-U254820	-	-	-
Arabidopsis	Single	At2g37240 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49234)
Chromosome 9
Position 0.81 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47165)
Chromosome 9
Position 1.00 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Eggplant-COSII
Map version 63 (location: 42201)
Chromosome 9
Position 31.50 cM
Confidence F(LOD3)
Protocol dCAPS

Eggplant-COSII

PCR data Exp. ID 43766

Forward primer (5'-3')

GCAGTGTCTATCATAATGTGCATATCTT

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACAAGTGCGACTCCTGCTGCATCC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41388)
Chromosome 9
Position 26.70 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43364

Forward primer (5'-3')

TCCTTTGTCGCATAAGAGCTGATTATC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACAAGTGCGACTCCTGCTGCATCC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38366)
Chromosome 9
Position 1.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39619

Forward primer (5'-3')

TCCTTTGTCGCATAAGAGCTGATTATC

Accessions and product sizes

Solanum pennellii TA56

500

Solanum lycopersicum TA209

500

Approximate temperature

55°C

Reverse primer (5'-3')

ACAAGTGCGACTCCTGCTGCATCC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

360

Solanum pennellii TA56

270

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25848)
Chromosome 2
Position 15.65 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10806
Forward primer (5'-3') TCCTTTGTCGCATAAGAGCTGATTATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACAAGTGCGACTCCTGCTGCATCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 500	Approximate temperature 55°C

PCR data Exp. ID 10807
Forward primer (5'-3') TCCTTTGTCGCATAAGAGCTGATTATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACAAGTGCGACTCCTGCTGCATCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 500	Approximate temperature 55°C

PCR data Exp. ID 10808
Forward primer (5'-3') TCCTTTGTCGCATAAGAGCTGATTATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACAAGTGCGACTCCTGCTGCATCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 500	Approximate temperature 55°C

PCR data Exp. ID 10809
Forward primer (5'-3') TCCTTTGTCGCATAAGAGCTGATTATC	Digested band sizes (using Hpy188I) Solanum pennellii LA716: 270 Solanum lycopersicum LA925: 360	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACAAGTGCGACTCCTGCTGCATCC	Enzymes All possible enzymes for pennellii and and lycopersicum: Hpy188I
Accessions and product sizes Solanum lycopersicum LA925: 500 Solanum pennellii LA716: 500	Approximate temperature 55°C